JIDT: Java Information Dynamics Toolkit
JIDT is a flagship toolkit for information theory in complex systems, originally designed by Joe Lizier. It’s writen in super-duper-portable Java, which means you can simply download it and run it from Python, Matlab, or R – without installation. Damn that’s convenient.
FastDMF: Fast Dynamic Mean Field model simulator
This library implements an extended version of Deco’s DMF simulator of brain dynamics using a multi-threaded C++ backend (via Eigen), and provides both Python and Matlab interfaces. This code is around 5-10x faster and consumes around 1000x less memory than previous implementations.